Publications

This is a small and infrequently-updated list of publications associated with our software.

  1. Kiiveri HT (2011). Multivariate analysis of microarray data: differential expression and differential connection. BMC Bioinformatics 12:42.
  2. Humburg P, Helliwell CA, Bulger D, Stone G (2011). ChIPseqR: analysis of ChIP-seq experiments. BMC Bioinformatics 12:39.
  3. Phatak A, Kiiveri H, Clemmensen LH, Wilson WJ (2010). NetRaVE: constructing dependency networks using sparse linear regression. Bioinformatics 26:1576-7.
  4. Bragg LM, Stone G (2009). k-link EST clustering: evaluating error introduced by chimeric sequences under different degrees of linkage. Bioinformatics 25:2302-8.
  5. Humburg P, Bulger D, Stone G (2008). Parameter estimation for robust HMM analysis of ChIP-chip data. BMC Bioinformatics 18:343.
  6. Kiiveri HT (2008). A general approach to simultaneous model fitting and variable elimination in response models for biological data with many more variables than observations. BMC Bioinformatics 9:195.