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TileHMM
TileHMM is an R package designed for the analysis of ChIP-chip data. It is available under the General Public License and comes with absolutely no warranty.
News
- 30 September 2009
- TileHMM version 1.0-3 is now available for download. This update fixes some minor bugs in the documentation and provides a more compact version of the included ChIP-chip dataset.
- 18 August 2008
- An article describing the methodology behind TileHMM has been published by BMC Bioinformatics.
- TileHMM version 1.0-2 is now available for download.
- 30 May 2008
- TileHMM version 1.0-1 is now available for download.
Download
The latest version of TileHMM is available for download as
Instructions for the installation of R packages can be found on the R Project website for Unix, Windows and Mac OS X.Previous versions of TileHMM are available from the archive.
Documentation
The package documentation is available as PDF and HTML.A tutorial introducing the main functions of TileHMM and the typical work flow for a ChIP-chip analysis is available as PDF.
Data
Simulated ChIP-chip data for testing and comparison is available for download (63MB).The result of a TileHMM based analysis of the H3K27me3 data published by Zhang et al. (2007) is available as GFF file.