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ChIPsim
ChIPsim is an R package for the simulation of ChIP-seq data. It is available under the General Public License and comes with absolutely no warranty.
News
- 2 November 2009
- Bioconductor 2.5 has been released. It includes the latest version of ChIPsim.
- 13 September 2009
- ChIPsim is now available as part of Bioconductor.
- 6 September 2009
- Improvements to documentation.
- 30 August 2009
- Minor update to fix specification of imported packages.
- 28 July 2009
- Initial release
Download
To install the latest version of ChIPseqR ensure that you are using a recent version of R and execute the following two lines of code within an R session:
source("http://bioconductor.org/biocLite.R")
biocLite("ChIPsim")
Previous versions can be found in the archive.
Instructions for the installation of R packages can be found on the R Project website for Unix, Windows and Mac OS X.Documentation
The package documentation is available as PDF and HTML.A tutorial introducing the main functions of ChIPsim and demonstrating its use for the simulation of a nucleosome positioning experiment is available as PDF. This document also includes a discussion of how to extend ChIPsim for use with different types of experiments.